3-D limitation, I assume?
Dark Souls: Machina should beat the immortality
Magic: The Gathering: The 3D forms can't really do anything to the High 2-As. I'm sure there's some sort of incapacitory/BFR spell able to be pulled off by top tier planeswalkers. The ones without 1-A immortality should just be able to die to the normal rez negation stuff people like
Liliana Vess can pull off.
Bloodborne: Machina should clear
Berserk (Verse): They keep the Idea of Evil sustained in existence, in a way. Thing's sorta like a mini Chaos God. Idk how well they deal with fate stuff.
Cthulhu Mythos: The 1-A versions don't clear either
Darkest Dungeo: I think they can get past weird temporal anomaly stuff? If they can't they're trapped in the Farmstead forever. If they can, they should clear.
Destiny: Every race has its BFR method.
Oryx, the Taken King can incap with his own stuff, since Taking doesn't really proc regen/resurrection and even if it did his Throne can just kill them forever as it tears apart their minds (4D potency here, so suck it meth), even if they don't perma die. That actually would be good for him, since he constantly would grow in strength.
Warhammer 40,000: There are a lot of different ways they could be dealt with by powerful psykers and the like. BFR, primarily, but also a lot of incap.
Salt and Sanctuary: Machina clears when he kills the ressurection
Hotline Miami,
Hollow Knight,
Devil Daggers and
Titanfall (Verse) are haxless and tier 9.
Super Smash Bros.: Well, Machina can actually kill the tier 2s due to them having a real form to hit.
The Legend of Zelda: BFRed, eventually.
DOOM: Clears
Mistbor: If no prior knowledge in Mistorn, should clear.
Xionic Madness: CLears