I think my only real problem with the game as it is right now is that some choices feel pretty undercooked.
The best example is whether or not you tell the team that you're Mecha-Man in Episode 5. To be blunt, the party scene in Episode 6 just straight up does not make sense if you didn't tell the team the truth. I've seen people try to cook up explanations for it, but they all seem pretty flimsy to me.
Speaking of Episode 6, there's also other weirdness there. Namely that Chase calls you out for dating Invisigal... even when you aren't? I went for Visi on my first save, so it made sense there. But then on my second save I went for Blazer, and yet he said the same thing. So it's, like, unc what are you talking about?